Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSGENVTRVGTFILVGFPT---------------APGLQYLLFLLFLLTYLFVLVENLAIILTVWSSTSLHRPMYYFLSSMSFLEIWYVSDITPKMLEGFLLQQKRISFVGCMTQLYFFSSLVCTECVLLASMAYDRYVAICHPLRYHVLVTPGLCLQLVGFSFVSGFTISMIKVCFISSVTFCGSNVLNHFFCDISPI-LKLAC--------TDFSTAELVDFILAFIILVFPLLATMLSYAHITLAVLRIP-----SATGCWRAFFTCASHLTVVTVFYTALLFMYVRPQAIDSRSSNKL------ISVLYTVITPILNPLIYCLRNKEFKNALKKAFGLTSCAV--EGRLSSLLELHLQIHSQPL |
| 1U19 Chain:A ((4-349)) | MNGTEGP--NFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS--------------NFRFGENHAIMGVAFTWVMALACAAPPLVG--WSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVH-FIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U19.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -266439 for 2391 contacts (-111.4/contact) +
2D Compatibility (PS) -30734 + (NN) 2563 + (LL) 2124
1D Compatibility (HY) 400 + (ID) 850
Total energy: -292936.0 ( -122.52 by residue)
QMean score : 0.203
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