Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQPYTKNWTQVTEFVMMGFAGIHEAHLLFFILFL---------TMYLFTLVENLAIILVVGLDHRLRRPMYFFLTHLSCLEIWYTSVTVPKMLAGFIGVDGGK-----NISYADCLSQ---------LFIFTFLGATECF------LLAAMAYDRY------VAICMPLHYGAF-----VSWGTCIRL-----AAACWLVG---------FL--TPILPIYLLSQLTFYGPNVIDHF---------SCDASPLLALSCSDVTWKETVDFLVSLAVLLASSMVIAVS-------------YGNIVWTLLHIRS---AAERWKAFSTCAAHLTVVSLFYGTLFFMYVQTKVTSSINFNKVVSVFY-----SVVTPMLNPLIYSLRNK-----EVKGALGRV--FSLNFWKGQ |
4XGC Chain:E ((1-458)) | MEAICSSLEPLFP--------CREAAIETLGELIGDSSETYPSAIYLFGHSGTGKTALTRAFLKECGKRQNVRTAHLNAIECYTTKIMLEILLDSLAPDQGDALKVDNMLDFVEQLRRQAATRVEDQGFLIAVDNAERLRDMDANVLPVLLRLQELTNLNLCVILLSQLPFEKFYNKTGLSEIVCLHLAQYNKAETQRILGSDFQQVRNQLLEQKKRLEICQEAVTEDFYNNYLNLFLSVFYKACRDVPELQLTARKCLSTYLEPVLDGTSRLWRHIAGPLRSALTQIYMRIESLELPYYAKFLLIAAFLASHNAAKQDKRLFSTTLGPKSFSIDRLLAIFYAILEEKVGLTCNLLSQISTLVHLNLLSFVSGEQNIMEGSARLQCTIGLEFVLQIGKVVGFNVRQYLCD |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XGC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -285430 for 2015 contacts (-141.7/contact) +
2D Compatibility (PS) -31471 + (NN) -1735 + (LL) 672
1D Compatibility (HY) -14400 + (ID) 2850
Total energy: -335214.0 ( -166.36 by residue)
QMean score : 0.077
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