Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSGRPRTTSFAESCKPVQQPSAFGSMKVSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDS-GELVAIKKVLQDKRFKN------RELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSY--ICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPT-RE--QIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQELSSNPPLATILIPPHARIQAAASTPTNATAASDANTGDRGQTNNAASASASNST |
3NIZ Chain:A ((23-311)) | -------------------------------------------------------YQKLEKVGEGTYGVVYKAK--DSQGRIVALKRIR------GIPSTAIREISLLKELHHPNIVSLIDVIHS------ERCLTLVFEFMEKDLKKVL---DENKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGA-LKLADFGLARAF--GIPVR--HEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQEL-PLWKQRTFQVFEKKPWSSII-PGFCQEGIDLLSNMLCFDPNKRISARDAMNHPYFKDL-DPQI------------------------------------------------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3NIZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -193415 for 2084 contacts (-92.8/contact) +
2D Compatibility (PS) -28303 + (NN) -17350 + (LL) 5844
1D Compatibility (HY) -28800 + (ID) 5450
Total energy: -267474.0 ( -128.35 by residue)
QMean score : 0.693
|
|
|