Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKGKELSSDVYEANIVLNDKTMATLPKIGYHMLNDQLVMHNHVTEEKVVISRDFHFLKAVKFSDDYKLTFYNALGNEFFEYKKYDLQYSNISDKNKFIGLNCAKKIQFESRRVI
1YA5 Chain:T ((1-89))
-MATSELSSEVSEENSERREAFWAEWKDLTLSTRPEEGSSLHEEDTQRHETYHQQGQSQVLVQRSPWLMMRMGILGRGLQEYQ-------------------------LPYQRVL
General information:
TITO was launched using:
RESULT:
Template:
1YA5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5903 for 432 contacts (-13.7/contact) +
2D Compatibility (PS) -8976 + (NN) 5219 + (LL) 1628
1D Compatibility (HY) 1200 + (ID) 700
Total energy: -7532.0 ( -17.44 by residue)
QMean score : 0.090
(partial model without unconserved sides chains):
PDB file :
Tito_1YA5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YA5-query.scw
PDB file :
Tito_Scwrl_1YA5.pdb
: