Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELAVGNNAPDF-SLPTDSGE--NLSLSDFFDKKNIVLYFYPKDDTPGCTLEAKGFRDKINDFSSLDTVIIGASRDSIKCHASFKAKYSLP----------FYLISDENAKMLEKYGVWVEKSMFGKKYMGIERTTFLIDKKDKIVRIWEN-VKVSGHVNEVLEAVKKI
4MH2 Chain:A ((28-181))
---AVTQHAPYFKGTAVVSGEFKEISLDDF-KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDS---HFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLAL------RGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF
General information:
TITO was launched using:
RESULT:
Template:
4MH2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60573 for 1052 contacts (-57.6/contact) +
2D Compatibility (PS) -15181 + (NN) -7330 + (LL) 1444
1D Compatibility (HY) -10000 + (ID) 2600
Total energy: -94240.0 ( -89.58 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_4MH2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MH2-query.scw
PDB file :
Tito_Scwrl_4MH2.pdb
: