Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNGTVNKVILVGNLGRNPEIRTMQNGKEMANFSIATSEGWTDKFSGVRSEKTEWHNIVIFSEGLVKVVKDFVRKGSKVYIEGSLKTRKWTDQNGSERYTTEVVLQNFNGTLTLLDSRNNAASSDYKSNEYKQDETGQKDQYENFDSEVKEELIDDEIPF
1KAW Chain:A ((3-112))
---RGVNKVILVGNLGQDPEVRY----MAVANITLATSE----------SEQTEWHRVVLFG-KLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNV-GGTMQML---------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1KAW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47956 for 635 contacts (-75.5/contact) +
2D Compatibility (PS) -10552 + (NN) -3465 + (LL) 2456
1D Compatibility (HY) -11600 + (ID) 2900
Total energy: -74017.0 ( -116.56 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_1KAW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KAW-query.scw
PDB file :
Tito_Scwrl_1KAW.pdb
: