Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDRPLSPHLQIYKVQVTNFFSIMHRLTGILLFLLLVM-------LSWYFTLHVYFPELFIVKCLN---VLLSTFIAKLVCILCFISFSYHFLNGIRHLLWDAGFNLEITDVLKSAMLLTVMLILSTMAFLFVFI
3VR9 Chain:C ((52-169))
-LKRPIAPHLTIYKPQMTWMVSGLHRVTGCAMAGTLLIGGVGFSVLPLDFTTFVEF-----IRGLGIPWVILDTF----KFIIAF-PIAFHTLNGIRFIGFDMAKGTDIPSIYRGAYLVLGLAALISLAVVVYPR
General information:
TITO was launched using:
RESULT:
Template:
3VR9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69295 for 568 contacts (-122.0/contact) +
2D Compatibility (PS) -10885 + (NN) -6848 + (LL) 1476
1D Compatibility (HY) -10400 + (ID) 2000
Total energy: -97952.0 ( -172.45 by residue)
QMean score : 0.275
(partial model without unconserved sides chains):
PDB file :
Tito_3VR9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VR9-query.scw
PDB file :
Tito_Scwrl_3VR9.pdb
: