Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVKIRLARFGAKKRPFYRIVVADSRAPRDGRFIERIGQYDPMLSKDNKNCVVVKADRLKYWLNVGAQASERVLWFIKKGIITLEAEKKKVETKKAEIKKVKEQEV
2YKR Chain:P ((1-81))
-MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEK-EEGTRLDLDRIAHWVGQGATISDRVAALIKEVNKAA----------------------
General information:
TITO was launched using:
RESULT:
Template:
2YKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40739 for 554 contacts (-73.5/contact) +
2D Compatibility (PS) -8288 + (NN) -3319 + (LL) 2488
1D Compatibility (HY) -3600 + (ID) 2000
Total energy: -55458.0 ( -100.10 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_2YKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YKR-query.scw
PDB file :
Tito_Scwrl_2YKR.pdb
: