Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIFLDSVDLNEIEELKEF--IDGITTNPSLIAKSG-RKDKYEGLISEICSIVTGPVSVEVVASNHEDMVKEGLKLTKIASNIVVKLPLTYEGLISCKKLWTEHKIPANITLCFSPGQALLAAKAGACFISPFVGRLDDISYDGLLLIEDICTIYSNYGFDTKILVASVRSPTHVIEAARLGANSITVPAKVLRQLLNHPLTDRGLAIFEKDWSTKQ
3S1U Chain:B ((1-212))
MKIFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVEVVSTKYEGMVEEARKIHGLGDNAVVKIPMTEDGLRAIKTLSSEH-INTNCTLVFNPIQALLAAKAGVTYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKKVS
General information:
TITO was launched using:
RESULT:
Template:
3S1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155831 for 1743 contacts (-89.4/contact) +
2D Compatibility (PS) -22599 + (NN) -2668 + (LL) 64
1D Compatibility (HY) -22800 + (ID) 5500
Total energy: -209334.0 ( -120.10 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_3S1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S1U-query.scw
PDB file :
Tito_Scwrl_3S1U.pdb
: