Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MERVLITGGAGFIGSH-LVDDLQQDYDVYVLDNYRTGKREN---IKSLADDH--VFELDIREYDAVEQIMKTYQFDYVIHLAALVSVAESVEKPILSQEINVVATLRLLEIIKKYNSHIKRFIFASSAAVYGDLPDLPKSDQ-SLILPLSPYAIDKYYGERTTLNYCSLY-NIPTAVVKFFNVFG--PRQDPKSQYSGVISKMFD-----SFEHNKPFTFFG------DGLQTRDFVYVYDVVQSVRLIME---HKDAIGHGYNIGTGTFTNLLEVYRIIGELYGKSVEHEFKEARKGDIKHSYADISNL-KALGFVPKYTVETGLKDYFNFEVDNIEEVTAKEVEMS |
| 2UDP Chain:B ((2-329)) | --RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN--VKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQ--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2UDP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -177540 for 2581 contacts (-68.8/contact) +
2D Compatibility (PS) -32142 + (NN) -7583 + (LL) 1636
1D Compatibility (HY) -18000 + (ID) 5250
Total energy: -238879.0 ( -92.55 by residue)
QMean score : 0.455
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