Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSTPHIKPMNDVEIAETVLLPGDPLRAKFIAETYLDDVEQFNTVRNMFGFTGTYKGKKVSVMGSGMGMPSIGIYSYELIHTFGCKKLIRVGSCGAMQENIDLYDVIIAQGASTDSNYVQQYQLPGHFAPIASYQLLEKAVETARDKGVRHHVGNVLSSDIFYNADTTASERWMRMGILGVEMESAALYMNAIYAGVEALGVFTVSDHLIHET--STTPEERERAFTDMIEIALSLV
3TL6 Chain:D ((11-240))
---TPH-NGAKYGEIAETVLMAGDPLRVKLLADTYLTDVVQYNSVRGAVGYTGYYKGVKLSVQAHGMGMPSIGIYAYELFNFYGVKRIIRIGSAGAFDESLKLGDIVIGMGACYDSNFERQYDIPGKYSCIADFQLCREAVDAAEKLGYRYKVGNIYSANYFYD---DHSGAWKKMGVLAVEMEAAALYMIAARARKQALCMLTISD-LCYGSGEKMTAEERRTKFTQMMEVALSL-
General information:
TITO was launched using:
RESULT:
Template:
3TL6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -169809 for 1937 contacts (-87.7/contact) +
2D Compatibility (PS) -24206 + (NN) -5350 + (LL) 804
1D Compatibility (HY) -24800 + (ID) 5900
Total energy: -229261.0 ( -118.36 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_3TL6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TL6-query.scw
PDB file :
Tito_Scwrl_3TL6.pdb
: