Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
3BDC Chain:A ((7-135))
-------------------------------------------------------------------------------------LHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPEFN------EKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHEQLLRKAEAQAKKEKLNIWS--------
General information:
TITO was launched using:
RESULT:
Template:
3BDC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55089 for 1035 contacts (-53.2/contact) +
2D Compatibility (PS) -13800 + (NN) -3111 + (LL) 6020
1D Compatibility (HY) -16000 + (ID) 6200
Total energy: -88180.0 ( -85.20 by residue)
QMean score : 0.623
(partial model without unconserved sides chains):
PDB file :
Tito_3BDC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BDC-query.scw
PDB file :
Tito_Scwrl_3BDC.pdb
: