Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
2FOK Chain:A ((287-386))
VPKRVYWEMLATNLTDKEYVRTRRALILEILIKAGSLKIEQIQDNLKKL---------GFDEVIETIENDIKGLINTGIFIEIKGRFYQLKD---------------------HILQFVIPNRLV----
General information:
TITO was launched using:
RESULT:
Template:
2FOK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31074 for 627 contacts (-49.6/contact) +
2D Compatibility (PS) -10047 + (NN) -823 + (LL) 2784
1D Compatibility (HY) -7200 + (ID) 1050
Total energy: -47410.0 ( -75.61 by residue)
QMean score : 0.319
(partial model without unconserved sides chains):
PDB file :
Tito_2FOK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FOK-query.scw
PDB file :
Tito_Scwrl_2FOK.pdb
: