Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFP--DALFIFLAPPSLDHLRERLVGRGTESNEKIQSRINEARKEVE--MMNLYDYVVVNDEVELAKNRIQCIVEAEHLKRERVEAKYRKMILEAKK
2QOR Chain:A ((9-198))
--MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQELTREMDEADKVGFNYFIVNDDLARTYAELREYLLGSY-------------------
General information:
TITO was launched using:
RESULT:
Template:
2QOR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50193 for 1383 contacts (-36.3/contact) +
2D Compatibility (PS) -20594 + (NN) -8163 + (LL) 2400
1D Compatibility (HY) -14400 + (ID) 3250
Total energy: -94200.0 ( -68.11 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_2QOR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QOR-query.scw
PDB file :
Tito_Scwrl_2QOR.pdb
: