Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVVVQRVKEA--SVTNDTLN-----NQIKKGYCLLVGIGQNSTEQDADVIAKKIANARLFEDDNNKLNFNIQQMNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAY--GLTVKTGEFGTHMNVSINNDGPVTIIYESQDGKIQ
3KOC Chain:D ((1-159))
MRVVIQRVKGAILSVR-----ELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD----
General information:
TITO was launched using:
RESULT:
Template:
3KOC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58797 for 995 contacts (-59.1/contact) +
2D Compatibility (PS) -15785 + (NN) -8015 + (LL) 208
1D Compatibility (HY) -14800 + (ID) 3050
Total energy: -100239.0 ( -100.74 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_3KOC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KOC-query.scw
PDB file :
Tito_Scwrl_3KOC.pdb
: