Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKMINKLIVPVTASALLLGACGASATDSKENTLISSKAGDVTVADTMKKIGKD---------------QIANASFTEMLNKILADK---YKNKVNDKKIDEQIEKMQKQYG--GKDKFEKALQQ-QGLTADKYKENLRTAAYHKELLS---DKIKISDSEIKEDSK----------KASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVS-KDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQT---DKDFEKALFKLKDGEVSEVVKSS-FGYHIIKADKPTD--FNSEKQSLKEKLVDQKVQKNPKLLTDAYKDLLKEYDVDFKDRDIKSVVEDKILNPEKLKQGGAQGGQSGMSQ |
| 3NRK Chain:A ((50-352)) | ----------------------------LNRVIATVGTVSISELDLDDATEKYNRLQKHLKHEDYRKSFRTRIIDFLIDRAIVDVVAEEESIQVNEQRVDSEIEKRMEVMGITNRKQFEKTMETSSGMPFELWVTELPYQIKKGQLLQLKIAVPPPNEQEIRSWYNQNKDKVGFEIRYRIISIAPENDS----IQEENRLYKEVSEIRKSILADP-SSFALIAGSPRNDPALRARRGMVEWISSFDLYKYSKITATIAAPLPNGGVSEVFRDERKRYCILKIEGKRPTPMENLRGGIQNILYRDKEE-D--TFHRWLKESRAEIPIQIFDEAYRKENKI---------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NRK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 31547 for 1697 contacts (18.6/contact) +
2D Compatibility (PS) -28810 + (NN) -13533 + (LL) 2656
1D Compatibility (HY) -6400 + (ID) 2250
Total energy: -16790.0 ( -9.89 by residue)
QMean score : 0.517
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