Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---MLDKNQLAKYKQDHLCEYEKIMSNNEKEALEEKVASLDLDFIAKLYNDLYINKKTIDDVSAVSEVKYDIKSQMSDDEIKRLEEQGLQAIKEGQFAVLLMAGGQGTRLGYKGPKGSFEI---EGVSLFELQANQLKTLNHQSGHT------IQWYIMTSDINHEETLAYFEAHSYFGYDQEAIHFFKQDNIVALSEEGKLILNQQGRIMETPNGNGGVFKSLDKAGYLEEMSNNGVKYIFLNNIDNVLVKVLDPLFAGFTVEHDYDITSKTIQ-PKPGESVGRLVNVDCKDTVLEYSELDPEVANQ--------FNNANIGIHAFKLGFILNAV---NRELPYHLAIKNLKQLDENFGVIEQPT---LKFELFYFDIFTYGTSFVTLQVPREEEFSPLKNKE---GKDSVATATEDLRRMGLI---------------------------------------------------------------------- |
| 1JV1 Chain:A ((1-501)) | MNINDLKLTLSKAGQEHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFR----MEPVPREVLGSATR-DQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHHCWVLNAGGHFIDENGSRLPAIPRLKDANDVPIQCEISPLISYAGEGLESYVADKEFHAPLIIDENGVHELV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JV1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -127178 for 3119 contacts (-40.8/contact) +
2D Compatibility (PS) -42802 + (NN) -23052 + (LL) 312
1D Compatibility (HY) -32400 + (ID) 6600
Total energy: -231720.0 ( -74.29 by residue)
QMean score : 0.474
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