Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKLLLPLIIMLLVLAACGNQGEKNNKAETKSYKMDDGKTVDIPKDPKRIAVVAPTYAGGLKKLGANIVAV------NQQVDQSKVLKDKFKGVTKIGDG----DVEKVAKEKPDLIIVYST----------DKDIKKYQKVAPTVVVDYNK---HKYLEQQEMLGKIVGKEDKVKAWKKDWEETTAKDGKEIKKAIGQ--DATVSLFDEFDKKLYTYGDNWGRGGEVLYQA-FGLKMQPEQQKLTAKAGWAEVKQEEIEKYAGDYIVSTSEGK-PTPGYESTNMWKNLKATKEGHIVKVDAGTYWYNDPYTLDFMRKDLKEKLIKAAK-- |
| 2X4L Chain:A ((52-349)) | -----------------------------PWSFKDDRGTTVKLDKVPANIVAF-TGVAAALFDYGVEVKGVFGPTTTKDGKPDVQAGDLDVDKVTVLGNEWGKLNVEKYASLAPEVLITTTFDTAGTLWSVPEESKDKVAKLAPSVAISVFDRQLTQPLQRMWELAESLGADMKAKKVTDAKAAF-DKAAARLRAAAKAKPEIRVLAGSASPDLFYVSGTNLSVDLEYFKALGVNFVEPSEDAKKATGGWFESLSWENVDKYPADVIIMDDRASTIQPADITEGTWKQLPAVKAGQVIARSPEPILSYDKCTPLL--DNLAEAIENAKKVG |
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General information:
TITO was launched using:
| RESULT:
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Template: 2X4L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -26439 for 2177 contacts (-12.1/contact) +
2D Compatibility (PS) -29627 + (NN) -15628 + (LL) 3100
1D Compatibility (HY) -9600 + (ID) 2950
Total energy: -81144.0 ( -37.27 by residue)
QMean score : 0.430
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