Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MNILFGISDTQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEEEKAKALLKQFEDAFKKENIE-CESVLKSGDLIDVVLDMAKDY--DLLLIG-ASESNLLYRLFISHQNSLVEQSSIPVVIAK--
5AHW Chain:D ((2-147))
SAYQTVVVGTDGSDSSLRAVDRAGQIAAASN---AKLIIATAY-----------------FPQAPIYAILREANDRAKAAGATDIEERPVVGAPVDALVELADEVKADLLVVGNVGLSTIAGRLLGSVPANVARRSKTDVLIVHTS
General information:
TITO was launched using:
RESULT:
Template:
5AHW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107780 for 927 contacts (-116.3/contact) +
2D Compatibility (PS) -12885 + (NN) -5479 + (LL) 1572
1D Compatibility (HY) -2800 + (ID) 1200
Total energy: -128572.0 ( -138.70 by residue)
QMean score : 0.645
(partial model without unconserved sides chains):
PDB file :
Tito_5AHW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AHW-query.scw
PDB file :
Tito_Scwrl_5AHW.pdb
: