Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQNLLIQAENAIALLFLLNDKNLK-GKIDLIYIDPPFATNNHFTITNGRATTISNSKNGDIAYS-DKVVGMDFMEFLKQRLVLLKEL--LSEQGSI-------YVHTDYKIGHYVKVMLD-EIFGIQNFRNEIT-RIKCN----------P-KNFKRIGYGNI---KDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDK-DKRRY-TTVPIHAPGEVESGECSKAFKGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYALEQVGKRVQDIW----EFKDPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGIDNSDLAIQACKNKLETITKDLFVSQNFYDFLVF |
| 3DSM Chain:A ((1-327)) | -----------ASGLFITNEGNFQYSNATLSYYDPATC-----EVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSL--------VMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQL-----NGTRDTLYWINN------DIWRMPVEADRVPVRPFLEFRDTKYYGLTV-NPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGIIPGAFCWKLEHHHHH------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DSM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -6600 for 2273 contacts (-2.9/contact) +
2D Compatibility (PS) -30902 + (NN) -4054 + (LL) 3616
1D Compatibility (HY) -13600 + (ID) 3200
Total energy: -54740.0 ( -24.08 by residue)
QMean score : 0.192
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