Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDM-AVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAERFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESIKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI |
1GVF Chain:A ((2-284)) | SIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIA-LEEIYALCSAYST-TYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLG-----------SAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSK--TPKIDFQRLAEIREVVDVPLVLHGASDVP---------------------DEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRI |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GVF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -147453 for 2364 contacts (-62.4/contact) +
2D Compatibility (PS) -29806 + (NN) -15824 + (LL) 712
1D Compatibility (HY) -22800 + (ID) 5450
Total energy: -220621.0 ( -93.33 by residue)
QMean score : 0.616
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