Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEKLVIGSRGSELALWQANHIKERLKKEC-SMESEIRIVKTTGDKILDAPLNKIGGKGLFTKELEELLLKGAIDLAVHSLKDVPVVFEKGLDLACITKRADVRDTFLSVKFPDLMSLPKGAKVGTTSLRRSMQIKFKRKDLDTESLRGNVQTRLKKLECGEFDAIILAEAGLCRLNVQGAKYRKAFSVKEMIPSMGQGALGVEMLKNHKHFITLQKLNNEESAFCCHLEREFIKGLNGGCQIPIGVHANLMGDEVKIRAVLGLPNGKEVIAKEKQGDKTKAFDLVQELLEEFLQSGAKEILEKAQLF |
1PDA Chain:? ((3-219)) | DNVLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTRGDV---------IGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLG-LESRIRAALPPEISLPAVGQGAVGIECRLDD-----------------------------------------------------------------------------------------SRTRELLAAL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PDA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -44219 for 1621 contacts (-27.3/contact) +
2D Compatibility (PS) -22434 + (NN) -11385 + (LL) 7024
1D Compatibility (HY) -12800 + (ID) 4850
Total energy: -88664.0 ( -54.70 by residue)
QMean score : 0.414
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