Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKFAYSEPCLDEEDKKAVLEVLNSKQLTQGKYSLLFEEALCEFLGVKHALAFNSATSALLTLYRNFSDFNADRNEIITTPISFVATANMLLESGYTPVFAEVKNDG-NIDELALEKLITKKTKAIVSVDYAGKSVEIESIQRLCKKYSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTAEGGAVVTNNSELYEKMKLFRSHGMLKKDFFEGEVKSVGYNFRLNEIQSALGLSQLKKAPLLRQKREEVALIYDEIFKDNPYFTPLHPLLKHQSSNHLYPILMHQKF-FTCKKLILESLHKLGILVQVHYKPIYQYQLYQQLFNTAPLKSAEDFYSAEISLPCHANLDLESVQNIAHGVLKTFEGFNRMGFI |
| 1MDO Chain:A ((9-384)) | -DFLPFSRPAMGAEELAAVKTVLDSGWITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALG-I-GEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGAR-GTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVD---QAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAG-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -185570 for 3197 contacts (-58.0/contact) +
2D Compatibility (PS) -40006 + (NN) -25422 + (LL) 736
1D Compatibility (HY) -18000 + (ID) 5200
Total energy: -273462.0 ( -85.54 by residue)
QMean score : 0.558
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