Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKNTSSSTTLTMNDTIAAIATPLGKGAISIIKISGHNALNILKQLTQKQDFTPRYAYVCDIFSDGVLLDKALVIYFKAPYSFTGEDVCEIQCHGSPLLAQNILQACLNLGARLAKAGEFSKKAFLNHKMDLSEIEASVQLILCEDESVLNALARQLKGELKIFIEEARNNLLKLLASSEVLIDYSEEDIPSDFLKEVSFNLEKQIASFKDLLDFSNAQKQRNKGHALSIVGKPNAGKSSLLNAMLLEERALVSDIKGTTRDTIEEVIELKGHKVRLIDTAGIRESAD-EIERLGIEKSLKSLENCDIILGVFDLSKPLEKEDFNLMDTLNRTKKPCIVVLNKNDLAPKLELE------ILKSYLKIPYSILETNTLNSKACLKDLSQKISEFFPKLDTQNKLLLTSLAQTTALENAITELQNAKSHLDTLELFSYHILSAIENLNLLTRPYETSQMLDSMFSEFCLGK |
1MKY Chain:A ((2-166)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATVLIVGRPNVGKSTLFNKLVK--------------DPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAE------HNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPVDDEVFIDGRKYVFVDTAGLEKYSNYR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MKY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -82181 for 1074 contacts (-76.5/contact) +
2D Compatibility (PS) -15339 + (NN) -3795 + (LL) 17960
1D Compatibility (HY) -6800 + (ID) 2100
Total energy: -92255.0 ( -85.90 by residue)
QMean score : 0.532
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