Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MESVETNKNLPIEYRSEQGRLNILGFWIFLGAEIALFATLFATYFVMRKAGSNAGHPPAEM----------FELWLVLIMTFLLLTSSFTCGLAIGEMRKGNVKMLTIYSIITLILGAGFVGFELYEFAHYVTEGVTMQVGSYWSAFFVLLGTHGLHVTVGIFWISFILIQIKMHGLTPKTASKVFISSLYWHFLDVVWIFIFTGVYLLGMVN
1FFT Chain:C ((19-203))
---------------HDAGGTKIFGFWIYLMSDCILFSILFATYAVLVNG-----------TAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGA--
General information:
TITO was launched using:
RESULT:
Template:
1FFT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159217 for 1198 contacts (-132.9/contact) +
2D Compatibility (PS) -17606 + (NN) -2246 + (LL) 1096
1D Compatibility (HY) -26400 + (ID) 4100
Total energy: -208473.0 ( -174.02 by residue)
QMean score : 0.252
(partial model without unconserved sides chains):
PDB file :
Tito_1FFT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FFT-query.scw
PDB file :
Tito_Scwrl_1FFT.pdb
: