Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDYEKALAFIKSNSTLEQEEGTEVIFKQAQETARGNLDPFLLKDLKQHLGGTNDAIKEAPQEIQMPDFSNLEIATAAALQMRATMGSPNIDLSNGVTTEYRVVEGD-YGDIPVRIYRHEEATKPVPAFIFYHGGGFVGGTPA--VVENFCKGIAEKLPAVVINVDYHLA----PEFPAPAAPKDCYRVLEWVVEQSNELGIDASKIGVSGDSAGGTLAAAVSYMDYEAET-NYVGFQALLYPALTLVDEDNDKY-QWDISKFGASEDTLPLVAPGIIGMNSSGELLRKAYVRDE-NPAAPIYSPLSAV--DKSIYPPTLIASAEFDALRAFADVFAKELRASGVQTKAIVYQGMCHAFIDKY-GIFPQA-EDVADEIVQMMKEIF |
| 1JKM Chain:A ((87-366)) | ---------------------------------------------------------------------------------------------DDVETSTETILGVDGNEITLHVFRPAGVEGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAA-AGSVVVMVDFRNAWTAEGHHPFPSGVEDCLAAVLWVDEHRESLGL--SGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGGYAWDHERRLTELPSLVEND---G-Y--FIEN-G-GMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELDPLRDEGIAFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADR- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JKM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -175366 for 2353 contacts (-74.5/contact) +
2D Compatibility (PS) -28523 + (NN) -10248 + (LL) 7288
1D Compatibility (HY) -9600 + (ID) 3300
Total energy: -219749.0 ( -93.39 by residue)
QMean score : 0.522
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