Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------MKSTGMVRKIDELG-RVVIPIEIRRTMN-------LNVKDPLEIFTDEDAIILKKYSAGLVCDVTGEFSVDNKKFVDGKLTLSKEGAAALMEEIKRRFGDTL--
4YTK Chain:A ((1-127))
LEEGSYVRIKRGIYKGDLAMVDQISENNLEVMLKIVPRLDYGKFDERPTFAHRAPPQLFNPTMA--LRLDQANLYKRDDRHFTYKNEDYIDGYLYKSFRIQHVETKNIQPTVEELARF
General information:
TITO was launched using:
RESULT:
Template:
4YTK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5237 for 529 contacts (-9.9/contact) +
2D Compatibility (PS) -9686 + (NN) 2825 + (LL) 408
1D Compatibility (HY) -3600 + (ID) 1000
Total energy: -16290.0 ( -30.79 by residue)
QMean score : 0.317
(partial model without unconserved sides chains):
PDB file :
Tito_4YTK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YTK-query.scw
PDB file :
Tito_Scwrl_4YTK.pdb
: