Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METRELKNGQIMMIRKATKEDSSNIITYLNEVAGETDYLSFGQGEFAFSIAEEAEYIEESDKNPGSVMLLCFIDDELASISQLIGHIKKRELHTSELAISIRKKYWGLGIGTICMEELIKYAKSSEYLKLIYLEVVTENKRAINLYKKFGFIEAGEIPALMQVDRRYLDVTMMYLVI
4JLY Chain:E ((85-167))
---------------------------------------------------------------------------------------------SAEFQIIIAPEHQGKGFARTLINRALDYSFTILNLHKIYLHVAVENPKAVHLYEECGFVEEGHLVEEFFINGRYQDVKRMYIL-
General information:
TITO was launched using:
RESULT:
Template:
4JLY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66273 for 495 contacts (-133.9/contact) +
2D Compatibility (PS) -8730 + (NN) -70 + (LL) 7188
1D Compatibility (HY) -6800 + (ID) 1300
Total energy: -75985.0 ( -153.51 by residue)
QMean score : 0.518
(partial model without unconserved sides chains):
PDB file :
Tito_4JLY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JLY-query.scw
PDB file :
Tito_Scwrl_4JLY.pdb
: