Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKLLIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYDEVKPDIVTLDITMPEMDGLEALAQIMAKD--PSAKVIMCSAMGQQGMVVDAIKKGAKDFIVKPFQADRVLEALEKAAK
3RVJ Chain:B ((9-125))
-LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGASGYVVKPFTAATLEEKLNK---
General information:
TITO was launched using:
RESULT:
Template:
3RVJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63996 for 903 contacts (-70.9/contact) +
2D Compatibility (PS) -12648 + (NN) -9860 + (LL) 560
1D Compatibility (HY) -10000 + (ID) 2200
Total energy: -98144.0 ( -108.69 by residue)
QMean score : 0.696
(partial model without unconserved sides chains):
PDB file :
Tito_3RVJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RVJ-query.scw
PDB file :
Tito_Scwrl_3RVJ.pdb
: