Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----MKWSEYANLAQLSLEKFYLADTKEQFLNNFYPTENPEEDNKVFNYWWLAHLVEVRLDAYLRTKKQADLEIAENT--YMHNKNR----------NGETLIHDFYDDMLWNALAAYRLYKETGKPIYLEDAQLVWQDLVDTGWNNIMGGGFAWRRPQM---YYKNTPVNAPFIILSCWLYNELNETKYLEWAMKTYEWQTKVLV-REDGFVEDGINRLEDGAIDYEWKFTYNQGVYIGANLELYRITKEAKYLDTANKTADTSLKELTEDGIFKDEGSGGDEGLFKGIFYRYFTDLIEETADKTYRDFVLNSCQILVESAKVDGYLLMGMNW-KEKPSGKIPYSAELSGMIALEM--AAKLER--- |
| 4V1S Chain:A ((37-395)) | PGVEIGNNDYYTWCKETLSVID-KDLKISGTHSYYENQDRSQVSFIWGNIFLLYTYTEGISLSKSEWSDALMNCFLNFDNYWHPNYKGIAGYATLPTSAEKVPDRFYDENGWTAIGLCDAYLATQNNSYLEKAKGALA-FSLSGEDNVLGGGIYFQETFVSLPVQKNTICSAVTMLSCMKLYEITQDRQYLDAAIRINDWTVENLLDKSDNLLWD-AKMVADGSVNTQ-KWSYNAGFMIRSWLKMYQATKDEKYLSQAKATLASSEAKWYNS----INGALNDPGYFAFSIIDSWFDMYDTDKNTVWLTKAFHAINFIHNKLR-DGNGRYPEHWGTPTTSNLEKYDLRFSTVAAYMYMRAANYKRILN |
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General information:
TITO was launched using:
| RESULT:
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Template: 4V1S.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -84765 for 2897 contacts (-29.3/contact) +
2D Compatibility (PS) -35200 + (NN) -15164 + (LL) 504
1D Compatibility (HY) -16000 + (ID) 3600
Total energy: -154225.0 ( -53.24 by residue)
QMean score : 0.425
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