Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKWMVIISI------ISLVALLGACGNNDNEKDQEDKSTTDSTTKKAKSSSNESNKAAETKENDTNDKAATTDKGSSNPTKEEKDTSTTTDTPKKETPKSPAKTEAFSFSPSGFKVSTVESILGGDVTTTYLSSSKSFQKDFEALTLFINQYKVEHVINPTKEVSASNPESYLANKNGYVITLDISIKNNSKKDKMYKADQISLLGASKSVGGSLDNFIPSGFHLIGSSSDPYNFTAGKTARGLLTFTMDEATYNDLAKDSQIGVPDPSRFDSSSTKGSSQDNVVAPFPIK |
2HZM Chain:B ((1-312)) | VQQLSLFGSIGDDGYDLLISTLTTISGNP--PLLYNSLCTVWKPNPSYDVEPNRIKLSKEVPFSYLIDEKPLNFRILKSFESCSPWSLQISDIRSVSMQTIAETIILSSAGKNSSVSSLMNG-LGYVFEFQYLTIGVKFFM---KHGLILELQKIWQIEEAGNSQITSG---------GFLLKAYINVSRGTDIDRINYTET-VLMNLKKELQGYIE----------------------------------------------LSVPDRQSMDSRVAHG---NILIAAALEH |
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General information:
TITO was launched using:
| RESULT:
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Template: 2HZM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 65114 for 1621 contacts (40.2/contact) +
2D Compatibility (PS) -23574 + (NN) -8261 + (LL) 2440
1D Compatibility (HY) -6800 + (ID) 1650
Total energy: 27269.0 ( 16.82 by residue)
QMean score : 0.129
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