Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MISGLSHITLIVKDLNKTTTFLREIFNAEEIYSSGDQTFSLSKEKFFLIAGLWICIME-GD-SLQEQTYNHIAFRIQSEEVDEYIERIKSLGVEIKPERPRVEGEGRSIYFYDFDNHLFELHAGTLEERLKRYHE
1NKI Chain:A ((1-123))
MLTGLNHLTLAVADLPASIAFYRDLLGFRLEARW-------DQGAYLELGSLWLCLSREPQYGGPAADYTHYAFGIAAADFARFAAQLRAHGVREWKQN-R--SEGDSFYFLDPDGHRLEAHVGDLRSRLAAC--
General information:
TITO was launched using:
RESULT:
Template:
1NKI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65504 for 800 contacts (-81.9/contact) +
2D Compatibility (PS) -13019 + (NN) -2573 + (LL) 508
1D Compatibility (HY) -9200 + (ID) 1800
Total energy: -91588.0 ( -114.49 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_1NKI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NKI-query.scw
PDB file :
Tito_Scwrl_1NKI.pdb
: