Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIIGIAACTSGIAHTYIAKEKLTKAGLALGHNVHIETQGTIGIEDELSAEQVKNADVVIIAADIKISGKDRFK---GKRVVEI-PTDLAIKAPKQIINKIDKEINN---
1IIB Chain:A ((3-105))
KKHIYLFS--SAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKG-----QNADVVLLGPQIAYMLPEIQRLLPNKPVEVIDSLLYGKVDGLGVLKAAVAAIKKAAA
General information:
TITO was launched using:
RESULT:
Template:
1IIB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28325 for 720 contacts (-39.3/contact) +
2D Compatibility (PS) -10601 + (NN) -1369 + (LL) 640
1D Compatibility (HY) -2800 + (ID) 850
Total energy: -43305.0 ( -60.15 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_1IIB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IIB-query.scw
PDB file :
Tito_Scwrl_1IIB.pdb
: