Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MNIKQAADMFGLTVDTLRYYERVGVI-PPVHRNESGYRDYKTSDLNWVYLVKNLRNAGLSVESLIEFATLAQLRETQNVEAAQKQVLVDQLKELDEKLAEMKQVRDLLVYKIDSYDSHIAQFKAGELNADNVEKLWERDKF
1JBG Chain:A ((2-107))
KYQVKQVAEISGVSIRTLHHYDNIELLNPSALTD-AGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLDHP--------NFDRKAALQSQKEILMKKKQRMDEMIQTIDRTLLS---------------------------
General information:
TITO was launched using:
RESULT:
Template:
1JBG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49668 for 604 contacts (-82.2/contact) +
2D Compatibility (PS) -11290 + (NN) -7832 + (LL) 2760
1D Compatibility (HY) -4400 + (ID) 1150
Total energy: -71580.0 ( -118.51 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_1JBG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JBG-query.scw
PDB file :
Tito_Scwrl_1JBG.pdb
: