Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LKAVVKTNPGYDQ-MELKDVEEPQVYGDKVKIKVAFTGICGSDIHTFKGEYK---NPTTPVTLGHEFSGVVVEVGPDVTSIKVGDRVTSETTFETCGECIYCKEHDYNLCSNRRGIGTQANGSFAEFVLSREESCHVLDERISLEAAALTEPLACCVHSALEKTTIRPDDTVLVFGPGPIGLLLAQVVKAQGAT-VIMAGITKDSDRLRLAKELGMDRIVDTLKEDLAEVVLGMTGGYGAERVFDCSGAVPAVNQGLPLTKKKGDFVQVGLFAEKKNAIDEE-SIIQREIAYIGSRSQ-KPSSWILALDLLANGKIDTDKMITKVY-GLDDWREAFEAVMAGNEIKVLVKS |
| 2D8A Chain:A ((5-346)) | MVAIMKTKPG--YGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETH-IVCGKCY------------TKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVL--AGPISGKSVLITGAGPLGLLGIAVAKASGAYPVIV--SEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGK-VTIDFNNLIIFKALTIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRAGKTGKVVFM- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2D8A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -162937 for 2815 contacts (-57.9/contact) +
2D Compatibility (PS) -34743 + (NN) -14713 + (LL) 744
1D Compatibility (HY) -21200 + (ID) 5800
Total energy: -238649.0 ( -84.78 by residue)
QMean score : 0.477
|
|
|