Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAIFITLEGPDGSGKTTVGTLLNQKMTEAGIDFIKTREPGGSPISEKVRNIVLGIGNEEMDPKTEVLLIAGARRQHVVETIRPALAAGKSVLCDRFMDSSLAYQGAGRDMNMEQVLQVNLYAIEDTLPDRTYYLDVPAEVGLARIAANKGREVNRLDKEDITYHEKVQAGYEKVINMFPERFMRVDATKTPEEITETILADILRQLA
3HJN Chain:A ((1-192))
---MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILL---EEEVTPKAELFLFLASRNLLVTE-IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKR----K----NRFEKRE--FLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRR--
General information:
TITO was launched using:
RESULT:
Template:
3HJN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44771 for 1543 contacts (-29.0/contact) +
2D Compatibility (PS) -20687 + (NN) -8319 + (LL) 1540
1D Compatibility (HY) -14000 + (ID) 4000
Total energy: -90237.0 ( -58.48 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_3HJN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HJN-query.scw
PDB file :
Tito_Scwrl_3HJN.pdb
: