Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VEIKQIKAKDTQDIRHRVLRPEQ---------PEENAIYPND-D--MEGTFHLGAFEKDVLLGVASFYPEKSTVIMNPAQYRIRGVATERRMRLKGLGTALLAEGEAEIWTRGADIIWCN---ARIVAVGFYEKHGYRKVGKSFVI-PGIGEHYLMKKVNPNKKVDQDN
3F5B Chain:A ((15-178))
FCFKQMNKSQHELVLGWIHQPHINEWLHGDGLSNTIKDLHEFLNDGKPWATHWIAYDNEIPFAYLITSEIEKSEEYPDGAVTLDLFICRLDYIGKGLSVQMIHEFILSQFS-DTKIVLINPEISNERAVHVYKKAGFEIIGEFIASWHPVP-HYKMKLCIEDLKKQ---
General information:
TITO was launched using:
RESULT:
Template:
3F5B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21768 for 1007 contacts (-21.6/contact) +
2D Compatibility (PS) -15307 + (NN) -1187 + (LL) 168
1D Compatibility (HY) -6800 + (ID) 1100
Total energy: -45994.0 ( -45.67 by residue)
QMean score : 0.327
(partial model without unconserved sides chains):
PDB file :
Tito_3F5B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F5B-query.scw
PDB file :
Tito_Scwrl_3F5B.pdb
: