Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEVIEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLRNGANLAEPGEFTKRAF-LNGRID-LSQAEAVMDLIRA-----KTDRAMGVAIRQMDGNLSRLIRNL--RQEILDALAQVEVNIDYPEYDDVEEMTQRMLLE-KTELVRASVEQLLRTASQGKILREGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADADFILLVLNQNEELTVEDEA-LFE-AAAGHNYVVVLNKTDL---------ETKLDIDRVRELAGENPIVSTSLVNDEGLEA-LEE-AIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFN--------QFCLGK |
| 1MKY Chain:A ((2-439)) | ---------------ATVLIVGRPNVGKSTLFNKLV-----------------------------------------KDPVQDTVEWYG-------KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPE-ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPVD------DEVFIDGRKYVFVDTAGLEKYSN-------YRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKVP---SSAINSALQKVLAFTNLPRGLKIFFGVQVDIKPPTFLFFVNSI-EKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFKRSR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MKY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -124277 for 2895 contacts (-42.9/contact) +
2D Compatibility (PS) -40812 + (NN) -12977 + (LL) 6484
1D Compatibility (HY) -15600 + (ID) 3200
Total energy: -190382.0 ( -65.76 by residue)
QMean score : 0.309
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