Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------------MAKEDVIEIEGKVVETMPN----AMFTVELENGHQILATVSGK---IRKNYIRILVGDRVT-VEMSPYDLTRGRITYRFK-------------------
1FJG Chain:L ((5-129))
PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPKEAA
General information:
TITO was launched using:
RESULT:
Template:
1FJG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29227 for 465 contacts (-62.9/contact) +
2D Compatibility (PS) -7527 + (NN) 1189 + (LL) 0
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -39515.0 ( -84.98 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_1FJG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FJG-query.scw
PDB file :
Tito_Scwrl_1FJG.pdb
: