Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDTMILNDNHKIPTLGLGTWM---INNDRVAQVVKDAIELGYRHINTAQAYNNEKGVGVGIK----ESGITRESLFVTTKIAAEHKNYESATKSIDQSLEALGLDCIDLMIIHSP---QPWKEWRETDKHFDQGNL
4WDU Chain:A ((10-134))
------LNDGHFMPVLGFGTYAPPEVPRSKALEVTKLAIEAGFRHIDSAHLYNNEEQVGLAIRSKIADGSVKREDIFYTSKLWSTFHRPELVRPALENSLKKAQLDYVDLYLIHSPMSLKPGEELSPTDENGKVIFD
General information:
TITO was launched using:
RESULT:
Template:
4WDU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35272 for 764 contacts (-46.2/contact) +
2D Compatibility (PS) -11912 + (NN) -64 + (LL) 648
1D Compatibility (HY) -8800 + (ID) 2300
Total energy: -57700.0 ( -75.52 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_4WDU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WDU-query.scw
PDB file :
Tito_Scwrl_4WDU.pdb
: