Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKERVDVLAYKQGLFDTREQAKRGVMAGMVINVINGERYDKPGEKVADDTELKLKGEKLKYVSRGGLKLEKALQVFEISVADKLTIDIGASTGGFTDVMLQSGARLVYAVDVGTNQLVWKLRQDHRVRSMEQYNFRYAQKED----FKEGLPEFASIDVSFISL--NLILPALKEILVDGGQVVALIKPQFEAGR-EQIG-KNGIVKDKLVHEKVLTTVTNFTKDYGYTVKHLDFSPIQGGHGNIEFLMHLQKCQDPQNLVLDQIQDVIEKAHKEFKKNEEE |
| 3VC1 Chain:A ((116-270)) | --------------------------------------------------------------------------------GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFG-NRRARELRI-DDHVRSRVCNMLDTPFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTIT-GCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVDLTPDTLPYWELRATSSLVTGIEKAFIESYRDGSFQYVLIAADRV--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VC1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -40376 for 1077 contacts (-37.5/contact) +
2D Compatibility (PS) -15302 + (NN) -151 + (LL) 6468
1D Compatibility (HY) 2800 + (ID) 950
Total energy: -47511.0 ( -44.11 by residue)
QMean score : 0.328
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