Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MKTRSKLAAGFLTLMSVATLAACSGKTSNGTNVVTMKGDTITVSDFYDQVKTSKAAQQSMLTLILSRVFDTQYGDKVSDKKVSEAYNKTAKGYG---NSFSSALSQAGLTPEGYKQQIRTTMLVEYAVKEAAKKEL-TEANYKEAYKNYTPETSVQVIKL------------DAEDKAKSVLKDVKADGADFAKIAKEKTTATDKKVEYKFDSAGTS-LPKEVMSAAFKLDKNGVSDVVSTVDSTTYKTSYYIIKVTDKTEKKSDWKSYKNRLKEVILKDKTSDRSFQNKVISKALEKANVKIKDKAFAGILSQYATTSGSSSLKK-------------------------------------------------------------------------------- |
| 1M5Y Chain:A ((25-427)) | VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQAR-----------QQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVTELNLSHILIPLPENPTSDQVNEAESQARAIVDQAR-NGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRS------GVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKS-GKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDRAYRMLMNRKFSEEAASWMQEQRASAYVKILS |
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General information:
TITO was launched using:
| RESULT:
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Template: 1M5Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 7207 for 1827 contacts (3.9/contact) +
2D Compatibility (PS) -30928 + (NN) -12222 + (LL) 1592
1D Compatibility (HY) -6800 + (ID) 2450
Total energy: -43601.0 ( -23.86 by residue)
QMean score : 0.443
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