Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKKPIIIGVTGGSGGGKTSVSRAILSNFPDQ-------KITMIEHDSYYKD--QSHLTFEERVKTNYDHPLAFDTNLMIEQLNELIEGRPVDIPVYDYTKHTRSDRTIRQDPQDVIIVEGILVLEDQRLRDLMDIKLFVDTDDDIRIIRRIKRDMEERDRSLDSIIEQYTEVVKPMYHQFIEPTKRYADIVIPEGVSNIVAIDLINTKVASILNEAK
2JEO Chain:A ((21-235))
--MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRD----LEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDI
General information:
TITO was launched using:
RESULT:
Template:
2JEO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79444 for 1561 contacts (-50.9/contact) +
2D Compatibility (PS) -22173 + (NN) -11104 + (LL) 404
1D Compatibility (HY) -22400 + (ID) 4200
Total energy: -138917.0 ( -88.99 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_2JEO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JEO-query.scw
PDB file :
Tito_Scwrl_2JEO.pdb
: