Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKFQVISHPLIQHKLSILRRTTTSTKDFRELVDEIAMLMGYEVSRDLPLEDVEIQTP--VATTVQKQLAGKKLAIVPILRAGIGMVDGFLSLVPAAKVGHIGMYRDEETFQPVE-------YLVKLPEDIDQR--QIFVVDPMLATGGSAILAVDSLKKRGAASIKFVCLVAAPEGVAALQEAHPDVDIYTAALDEKLNEHGYIVPGLGDAGDRLFGTK
3G6W Chain:B ((5-216))
-----VIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASR---------KDMDVYIYYKKIP-DIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG--
General information:
TITO was launched using:
RESULT:
Template:
3G6W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -178789 for 1548 contacts (-115.5/contact) +
2D Compatibility (PS) -20761 + (NN) -1842 + (LL) 1164
1D Compatibility (HY) -17200 + (ID) 3550
Total energy: -220978.0 ( -142.75 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_3G6W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G6W-query.scw
PDB file :
Tito_Scwrl_3G6W.pdb
: