Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEHYYSEKPSVKSNKQTWSFRLRNKDFTFTSDSGVFSKKEVDFGSRLLIDSFEEPEVEGGILDVGCGYGPIGLSLASDFKDRTIHMIDVNERAVELSNENAEQNGI-TNVKIYQSDLFSNVD-SAQTFASILTNPPIRAGKKVVHAIFEKSAEHLKASGELWIVIQKKQGAPS---AIEKLEE------LFDEVSVVQKKKGYYIIKAKKV
3F4K Chain:A ((34-194))
---------------------------------------------TRKAVSFINELTDDAKIADIGCGTGGQTLFLADYV-KGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDN-LPFQNEELDLIWSEGAIYNIG--FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHF--
General information:
TITO was launched using:
RESULT:
Template:
3F4K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56156 for 1104 contacts (-50.9/contact) +
2D Compatibility (PS) -16214 + (NN) -7464 + (LL) 2576
1D Compatibility (HY) -5200 + (ID) 1400
Total energy: -83858.0 ( -75.96 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_3F4K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F4K-query.scw
PDB file :
Tito_Scwrl_3F4K.pdb
: