Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKGYRILIVEDDVMIGDLLQKILQREGYRVIWKTDGADVL------SVIQKVDLVIMDVMLPGEDGYQMSAKIKKLGLGIPVIFLSARNDMDSKLQGLQIG-EDYMVKPFDPRELLLRMRNMLEHHYGTFTQIKHLYIDAVTKKVFNESLHDEVLFTAIERKIFFYLYENRDSILTKEHFFEYLWQLEDRNPNIVNVHIKKIRAKINDQAGEMIENIYGEGYRLNTVVKK
4L85 Chain:C ((6-120))
-----VLIVEDEQAIRRFLRTALEGDGMRVFE----AETLQRGLLEAATRKPDLIILALGLPDGDGIEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR---------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4L85.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82983 for 789 contacts (-105.2/contact) +
2D Compatibility (PS) -12148 + (NN) -8924 + (LL) 9008
1D Compatibility (HY) -8000 + (ID) 2050
Total energy: -105097.0 ( -133.20 by residue)
QMean score : 0.648
(partial model without unconserved sides chains):
PDB file :
Tito_4L85.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4L85-query.scw
PDB file :
Tito_Scwrl_4L85.pdb
: