Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADCDSVTNSPLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGD-PTGTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITIS
2WFJ Chain:A ((24-176))
-----------------------GRVVFELFSDVCPKTCENFRCLCTGEK--GTGKSTQKP--LHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFA-VKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISG--QEVVREIENQKTDAASKPFAEVRILSC---
General information:
TITO was launched using:
RESULT:
Template:
2WFJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58661 for 1123 contacts (-52.2/contact) +
2D Compatibility (PS) -16148 + (NN) -13716 + (LL) 1504
1D Compatibility (HY) -11200 + (ID) 3400
Total energy: -101621.0 ( -90.49 by residue)
QMean score : 0.697
(partial model without unconserved sides chains):
PDB file :
Tito_2WFJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WFJ-query.scw
PDB file :
Tito_Scwrl_2WFJ.pdb
: