Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKACVVKELSGPSGMV-YTDIDEVSGDGGKVVIDVRAAGVCFPDLLLTKGEYQLK---------------LTPPFVPGMETAGVVRSAPSD-AGFHVGERVSAFG-------------------VLGGYAEQIAVPVANVVRSPVELDDAGAVSLLVNYNTMYFALARRAALRPGDTVLVLGAAGGVGTAAVQIAKAMQAGKVIAMVHREGAIDYVASLGADVVLPLTE-GWAQQVRDHTYGQGVDIVVDPIGGPTFDDALGVLAIDGKLLLIGFAAGAVPTLKVNRLLVRNISVVGVGWGEYLNAVPGSAALFAWGLNQLVFLG-LRPPPPQRYPLSEAQAALQSLDDGGVLGKVVLEP |
| 4J6F Chain:A ((34-381)) | MTAVLLTGHGGLEKLVYSRDVPVPAPAAGEVLIKVTACGMNNTDVWVREGAYGTEDDPSAVSTWRRHGNTLTFPRIQGTDTVGHIVAVGEGVDRARIGERVMVDFSIYNRDDDSLADIDYMGHGRDGGYAEYMALPAENAHVVATDLTDIELATFCCAYLTGERMLER-ARLAAGETVLVTGASGGVGSAIIQLARARGAV-PIAVAGP-GKEAAMLDIGAQAVVTRGQGDLAEAVEAASGGRPIDVVADLVGGPLFNDLLKILRPEGRYTTAGAIAGPVVQLDLRTMYLKQLELHGSSQGSR-----A---DFRRLVR-YIEEKKIRPLVGGVYPLSEFHRAQTDFMAKNFVGKLVVVP |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J6F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -258353 for 2689 contacts (-96.1/contact) +
2D Compatibility (PS) -33945 + (NN) -17184 + (LL) 940
1D Compatibility (HY) -12000 + (ID) 4800
Total energy: -325342.0 ( -120.99 by residue)
QMean score : 0.425
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