Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MNRFLTSIVAWLRAGYPEGIPPTDSFAVLALL--CRRLSHDEVKAVANELMRLGDFDQ----IDIGVVITHFTDELPSPEDVERVRARLAAQGW---PLDDVRDREEHA-
1SED Chain:A ((4-115))
DSMDHRIERLEYYIQLLVKTVDMDRYPFYALLIDKGLSKEEGEAVMRICDELSEELATQKAQGFVTFDKLLALFAGQLNEKLDVHETIFALYEQGLYQELMEVFIDIMKHFD
General information:
TITO was launched using:
RESULT:
Template:
1SED.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25010 for 619 contacts (-40.4/contact) +
2D Compatibility (PS) -10883 + (NN) -8694 + (LL) 0
1D Compatibility (HY) -5200 + (ID) 750
Total energy: -50537.0 ( -81.64 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_1SED.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SED-query.scw
PDB file :
Tito_Scwrl_1SED.pdb
: