Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRPLARLRGRRVVPQRSAGELDAMAAAGAVVAAALRAIRAAAAPGTSSLSLDEIA-ESVIRESGATPSFLGYHGYPASICASINDRVVHGIPSTAEVLAPGDLVSIDCGAVLDGWHGDAAITFGVGALSDADEALSEATRESLQAGIAAMVVGNRLTDVAHAIETGTRAAELRYGRSFGIVAGYGGHGIGRQMHMDPFLPNEGAPGRGPLLAAGSVLAIEPMLTLGTTKTVVLDDKWTVTTADGSRAAHWEHTVAVTDDGPRILTLG
1YVM Chain:A ((6-250))
---------------KTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEA------EGFSVVREYCGHGIGQGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILTL-
General information:
TITO was launched using:
RESULT:
Template:
1YVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120932 for 2122 contacts (-57.0/contact) +
2D Compatibility (PS) -26868 + (NN) -11241 + (LL) 1528
1D Compatibility (HY) -18000 + (ID) 4650
Total energy: -180163.0 ( -84.90 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_1YVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YVM-query.scw
PDB file :
Tito_Scwrl_1YVM.pdb
: